What does AGAD mean in HUMAN GENOME
The Arabidopsis Genome Annotation Database (AGAD) is an online portal designed to organize and store molecular data related to the Arabidopsis thaliana plant. AGAD provides an integrated resource of gene sequences, structure, function, and associated information for researchers studying this widely-used model organism. The database was created at the John Innes Centre in Norwich, U.K., with the aim of helping make Arabidopsis a more accessible organism for research into the genetics of complex traits in plants. AGAD contains detailed annotation of both genes and proteins from all four major subspecies of A. thaliana, and it has been used by many scientists as a key reference for genetic studies in this species.
AGAD meaning in Human Genome in Medical
AGAD mostly used in an acronym Human Genome in Category Medical that means Arabidopsis Genome Annotation Database
Shorthand: AGAD,
Full Form: Arabidopsis Genome Annotation Database
For more information of "Arabidopsis Genome Annotation Database", see the section below.
» Medical » Human Genome
Essential Questions and Answers on Arabidopsis Genome Annotation Database in "MEDICAL»GENOME"
What is the Arabidopsis Genome Annotation Database (AGAD)?
The AGAD is a comprehensive online database for searching, browsing and downloading annotations derived from the Arabidopsis thaliana genome sequence. It includes information on gene structure and function, protein domains and interactions, gene expression, genetic and physical map data, phenotypes, transposons and other repeat elements.
How can I access AGAD?
You can access AGAD at http://www.arabidopsis.org/agad/index.jsp or through the TAIR homepage https://www.arabidopsis.org/.
Where does the information in AGAD come from?
The data contained in AGAD come from curated manual annotation efforts of experts who specialize in Arabidopsis thaliana biology as well as high-throughput experiments that have generated large datasets identifying components of gene structure and function in this model species.
Is AGAD versioned?
Yes, the versions of the AGAD database are archived with each new release to enable users to look back into past versions when needed. Versioning provides an audit trail of data quality control checks associated with each new release cycle as well as enabling reproduction of results produced using older versions of AGAD data should this be necessary for any given research study.
Is there a list of frequently asked questions (FAQ) available for AGAD?
Yes, you can find FAQs about all aspects of using AGAD at http://www.arabidopsis.org/agad/FAQ_AGAD.
Does AGAD include details about gene regulation?
Yes, AGAD contains detailed information on transcriptional regulatory elements such as promoters and enhancers which act to control expression levels of genes in response to different environmental cues or developmental stages within plants subject to their action.
What kind of proteins does AGAD contain information about?
In addition to providing detailed information on protein sequences extracted from coding regions within genes, the database also contains annotations detailing protein domains which have been assigned based upon comparison against known databases such as Pfam or InterproScan as well as observed post-translational modifications and predicted molecular functions related to specific proteins found within Arabidopsis thaliana.
Does the information contained within AGAD extend beyond Arabidopsis thaliana?
No, while some industrial partners are making use of parts of the infrastructure found within AGAD to integrate their own proprietary databases it is always focused exclusively upon Arabidopisis thaliana organisms specifically.
Final Words:
The Arabidopsis Genome Annotation Database (AGAD) is an invaluable resource created by the John Innes Centre in Norwich, U.K., which enables researchers to quickly access and analyze detailed molecular data relating specifically to Arabidopsis thaliana (Ath). By providing accurate annotations regarding both genes and proteins found across all four major subspecies of Ath, AGAD has made it easier than ever before for scientists studying complex trait genetics in plants - such as growth rate or disease resistance - to use this important model organism in their research projects.